Welcome to Proteome Explorer

Proteome Explorer is a tool for searching, filtering and exploring in-depth proteomap^{[Liebermeister et al., 2014]} export files combined with output from your mass spec analysis.

Why Proteome Explorer?

Available on all operating systems
Very easy to use, no installation required
Filters show different sets of data
Interactive search for title, id, sequence or accession number
The Sequence Explorer reveals additional peptide information

Explore our Pioneer Project

As part of a publication^{[Rugen et al., 2023]}, we offer supplemental data online.
Arabidopsis Deep Mito Proteome +Only Mito

Create your own Project

If you want to start your own Proteome Explorer project, please feel free to contact Michael Senkler for advice / help.

Feature Showcase

About us

Proteome Explorer was created by Michael Senkler with a lot of subject-specific guidance from Nils K. Rugen and Hans-Peter Braun.

The group of Prof. Dr. Hans-Peter Braun investigates plant organelles with a special focus on respiratory chain protein complexes. Additionally, we analyze major aspects of plant proteomics including seed filling processes and plant pathogen interactions.
More information can be found here

Confidentiality

We encourage you not to use this tool for any valuable/secret/unpublished data. You can protect your project with a password which should work fine. But the database is and always will be plain text (no encryption) and we cannot assure the safety of your files. However, we will strive to do our best..